Classification and structure of proteins

From WikiLectures

Under construction / Forgotten

This article was marked by its author as Under construction, but the last edit is older than 30 days. If you want to edit this page, please try to contact its author first (you fill find him in the history). Watch the discussion as well. If the author will not continue in work, remove the template {{Under construction}} and edit the page.

Last update: Saturday, 17 Dec 2022 at 8.54 pm.

Proteins are macromolecular organic substances formed by a chain of amino acids' connected to each other peptide bond. It connects the amino group of one amino acid and the carboxyl group of the other amino acid by a simple covalent bond. Polycondensation creates a chain of different lengths of amino acids terminated on one side by a free amino group, the ``N-end, and on the opposite side by a free carboxyl group, the C-end.
Peptides are shorter chains of amino acids than proteins (less than 100) and have a molecular weight of less than 10,000.

Protein Classification[edit | edit source]

Proteins can be divided into two basic groups according to their composition.
Simple proteins[edit | edit source]

Simple proteins contain chains made up of only 'amino acids. We distinguish:

  • Fibrillar proteins - scleroproteins
Fibrillar proteins, insoluble in water, mainly perform structural functions. Individual peptide chains are interconnected by crosslinks so that they form parallel fibers. Examples of fibrillar proteins are collagen or keratin, found in hair, skin or nails.

Collagen fibers of type I (electron microscope)

  • Globular proteins - spheroproteins
The globular protein chain has a spherical shape allowing the hydrophobic parts of the molecule to wrap inside. They are therefore soluble in water, eg albumin.
Complex proteins[edit | edit source]

Complex proteins contain, in addition to the protein part, another non-protein structure. We distinguish:

  • Glycoproteins - containing a glycosidically bound carbohydrate;
  • Lipoproteins - containing lipids.

Structure of proteins[edit | edit source]

We can distinguish several structures in the protein molecule:

Primary Structure[edit | edit source]
Primary structure is determined by the sequence of amino acids in the protein chain. We read their order from N- to C-end. The amino acids of the chain are connected to each other by peptide bonds.
Secondary Structure[edit | edit source]
The secondary structure is conditioned by the formation of hydrogen bridges' between the NH– and C=O groups of the peptide bond. The most common secondary structures include the alpha-helix and the beta-folded sheet.
  • Alpha-helix'
The protein chain is coiled into a right-handed or left-handed helix with a single helix length of 3.6 amino acid residues. The side chains protrude outward from the helix.
  • Beta-Folded Sheet'
Strings are two', arranged parallel and antiparallel. They are mutually stabilized by H-bridges'.
Beta-folded sheet
In addition to these two secondary structures, there are many others, such as Zn-finger'' or Leu-zip.
Tertiary Structure[edit | edit source]
Tertiary structure describes the spatial arrangement of a molecule conditioned by interactions between side groups of the chain – electrostatic forces, H-bridges, SH-bonds, non-polar interactions, etc.
Quaternary Structure[edit | edit source]
Quaternary structure describes the spatial arrangement of protein subunits composed of more than one chain. The subunits are not linked to each other by peptide bonds.
Denaturation is an event in which all higher protein structures except the primary one are disrupted. The protein loses its functionality, but its energy value remains. Causes may include high temperature, pH change, or the presence of heavy metal salts.